Berendzen, P. B., T. Gamble, and A. M. Simons. Phylogeography of the bigeye chub, Hybopsis amblops (Teleostei: Cypriniformes): early Pleistocene diversification and post-glacial range expansion. Journal of Fish Biology. In press.
Gamble, T., P. B. Berendzen, B. Shaffer, D. E. Starkey, and A. M. Simons. (2008) Species limits and phylogeography of North American cricket frogs (Acris: Hylidae). Molecular Phylogenetics and Evolution Vol. 48: 112-125.
Berendzen, P. B., A. M. Simons, R. M. Wood, T. E. Dowling, and C. L. Secor. (2008) Recovering cryptic diversity and ancient drainage patterns in eastern North America: historical biogeography of the Notropis rubellus species group (Teleostei: Cypriniformes). Molecular Phylogenetics and Evolution Vol. 46: 721-737.
Golubtsov, A. S. and P. B. Berendzen. (2005) A review of the small barbs (Barbus, Cyprinidae) with a serrated dorsal spine from Ethiopia, with a discussion of the origin of forms with a reduced dorsal spine from the White Nile and Omo river tributaries. Journal of Ichthyology Vol. 45, Suppl. 1:S58-S88.
Simons, A. M., P. B. Berendzen, and R. L. Mayden. (2003) Molecular systematics of North American phoxinin genera (Actinopterygii: Cyprinidae) inferred from mitochondrial 12S and 16S ribosomal RNA sequences. Zoological Journal of the Linnean Society Vol. 139:63-80.
Berendzen, P. B., A. M. Simons, and R. M. Wood. (2003) Phylogeography of the northern hogsucker, Hypentelium nigricans (Teleostei: Cypriniformes): genetic evidence for the existence of the ancient Teays River. Journal of Biogeography Vol. 30:1139-1152.
Berendzen, P. B. and W. W. Dimmick. (2002) Phylogenetic relationships of Pleuronectiformes based on molecular evidence. Copeia Vol. 2002(3):642-652.
Dimmick, W. W., P. B. Berendzen, and A. S. Golubtsov. (2001) Genetic differentiation of three Barbus (Cyprinidae) morphotypes from the Genale River, Ethiopia. Copeia Vol. 2001(4):1123-1129.
Golubtsov, A. S. and P. B. Berendzen. (1999) Morphological evidence for the occurrence of two electric catfish (Malapterurus) species in the White Nile and Omo-Turkana systems (East Africa). Journal of Fish Biology Vol. 55, 3: 492-505.
Golubtsov, A. S., P. B. Berendzen, and C. A. Annett. (1999) Morphological variation and taxonomic status of Altai osmans, Oreoleuciscus, from the upper reaches of the Ob River system. Journal of Fish Biology Vol. 54, 4: 878–899.
Tang, K. L., P. B. Berendzen, E. O. Wiley, J. F. Morrissey, R. Winterbottom, and G. D. Johnson. (1999) The phylogenetic relationships of the suborder Acanthuroidei (Teleostei: Perciformes) based on molecular and morphological evidence. Molecular Phylogenetics and Evolution Vol. 11, 3: 415–425.